HL_9VXM_065
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCAAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXM_065 not in the Motif Atlas
- Homologous match to HL_6GSK_204
- Geometric discrepancy: 0.5425
- The information below is about HL_6GSK_204
- Detailed Annotation
- T-loop
- Broad Annotation
- T-loop
- Motif group
- HL_63894.4
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
9VXM|1|Ax|G|53
9VXM|1|Ax|U|54
9VXM|1|Ax|U|55
9VXM|1|Ax|C|56
9VXM|1|Ax|A|57
9VXM|1|Ax|A|58
9VXM|1|Ax|U|59
9VXM|1|Ax|U|60
9VXM|1|Ax|C|61
Current chains
- Chain Ax
- P/P-tRNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein mL40
Coloring options: