HL_9VXM_067
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUUACAC(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXM_067 not in the Motif Atlas
- Homologous match to HL_7VNV_002
- Geometric discrepancy: 0.2266
- The information below is about HL_7VNV_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9VXM|1|B|A|31
9VXM|1|B|C|32
9VXM|1|B|U|33
9VXM|1|B|U|34
9VXM|1|B|A|35
9VXM|1|B|C|36
9VXM|1|B|A|37
9VXM|1|B|C|38
9VXM|1|B|PSU|39
Current chains
- Chain B
- mitochondrial tRNAVal
Nearby chains
- Chain 6
- Large ribosomal subunit protein mL38
- Chain 8
- Large ribosomal subunit protein mL40
- Chain P
- Large ribosomal subunit protein uL18m
- Chain W
- Large ribosomal subunit protein bL27m
- Chain e
- Large ribosomal subunit protein mL46
- Chain f
- Large ribosomal subunit protein mL48
- Chain m
- Large ribosomal subunit protein mL55
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