HL_9VXN_018

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

9VXN|1|L5|C|1442, 9VXN|1|L5|A|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|C|1436
9VXN|1|L5|C|1437
9VXN|1|L5|U|1438
9VXN|1|L5|C|1439
9VXN|1|L5|U|1440
9VXN|1|L5|C|1441
9VXN|1|L5|C|1442
9VXN|1|L5|A|1443
9VXN|1|L5|G|1444
9VXN|1|L5|U|1445
9VXN|1|L5|C|1446
9VXN|1|L5|C|1447
9VXN|1|L5|G|1448

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LF

Large ribosomal subunit protein uL30

Chain LQ

Large ribosomal subunit protein eL18

Chain Lb

Large ribosomal subunit protein eL29