HL_9VXN_055

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXN|1|L5|G|4250
9VXN|1|L5|A|4251
9VXN|1|L5|C|4252
9VXN|1|L5|A|4253
9VXN|1|L5|G|4254
9VXN|1|L5|A|4255
9VXN|1|L5|A|4256
9VXN|1|L5|A|4257
9VXN|1|L5|C|4258

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

Large ribosomal subunit protein uL5

Chain u

Transfer RNA; tRNA