HL_9VXN_061

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9VXN|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXN_061 not in the Motif Atlas

Homologous match to HL_8GLP_067

Geometric discrepancy: 0.0431

The information below is about HL_8GLP_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9VXN|1|L5|A|4474
9VXN|1|L5|G|4475
9VXN|1|L5|C|4476
9VXN|1|L5|A|4477
9VXN|1|L5|G|4478
9VXN|1|L5|A|4479
9VXN|1|L5|A|4480
9VXN|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein