HL_9VXN_081

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9VXN|1|S2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXN_081 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.2591

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9VXN|1|S2|G|288
9VXN|1|S2|G|289
9VXN|1|S2|U|290
9VXN|1|S2|G|291
9VXN|1|S2|A|292
9VXN|1|S2|C|293
9VXN|1|S2|U|294
9VXN|1|S2|C|295

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

Small ribosomal subunit protein eS6

Chain SL

Small ribosomal subunit protein uS17