HL_9VXN_083

3D structure

PDB id

9VXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

9VXN|1|S2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXN_083 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.0647

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9VXN|1|S2|G|377
9VXN|1|S2|U|378
9VXN|1|S2|C|379
9VXN|1|S2|G|380
9VXN|1|S2|C|381
9VXN|1|S2|C|382
9VXN|1|S2|G|383
9VXN|1|S2|U|384
9VXN|1|S2|G|385
9VXN|1|S2|C|386
9VXN|1|S2|C|387

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

Small ribosomal subunit protein eS8

Chain SL

Small ribosomal subunit protein uS17