HL_9VXN_089
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- ACU(PSU)UAA(A2M)UCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXN_089 not in the Motif Atlas
- Homologous match to HL_9PN5_090
- Geometric discrepancy: 0.2167
- The information below is about HL_9PN5_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68749.4
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9VXN|1|S2|A|569
9VXN|1|S2|C|570
9VXN|1|S2|U|571
9VXN|1|S2|PSU|572
9VXN|1|S2|U|573
9VXN|1|S2|A|574
9VXN|1|S2|A|575
9VXN|1|S2|A2M|576
9VXN|1|S2|U|577
9VXN|1|S2|C|578
9VXN|1|S2|C|579
9VXN|1|S2|U|580
9VXN|1|S2|U|581
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SY
- Small ribosomal subunit protein eS24
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