HL_9W0N_016
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9W0N|1|1|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9W0N_016 not in the Motif Atlas
- Homologous match to HL_8B0X_048
- Geometric discrepancy: 0.1475
- The information below is about HL_8B0X_048
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9W0N|1|1|U|566
9W0N|1|1|U|567
9W0N|1|1|U|568
9W0N|1|1|U|569
9W0N|1|1|G|570
9W0N|1|1|U|571
9W0N|1|1|A|572
9W0N|1|1|U|573
9W0N|1|1|A|574
9W0N|1|1|A|575
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- Large ribosomal subunit protein bL32
- Chain c
- Large ribosomal subunit protein uL3
- Chain l
- Large ribosomal subunit protein uL15
- Chain q
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein bL21
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