Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9W0N_0011/1/59:68No text annotation
homologous
HL_8B0X_033
HL_35677.5
HL_9W0N_0021/1/87:95No text annotation
homologous
HL_8B0X_034
HL_65821.1
HL_9W0N_0031/1/123:128No text annotation
homologous
HL_8B0X_035
HL_82710.4
HL_9W0N_0041/1/137:142No text annotation
HL_9W0N_0051/1/158:168No text annotation
homologous
HL_8B0X_037
NA
HL_9W0N_0061/1/188:208No text annotation
HL_9W0N_0071/1/225:230No text annotation
homologous
HL_8B0X_039
HL_63151.1
HL_9W0N_0081/1/246:252No text annotation
homologous
HL_8B0X_040
HL_76371.4
HL_9W0N_0091/1/305:312No text annotation
homologous
HL_8B0X_041
HL_13999.5
HL_9W0N_0101/1/327:335No text annotation
homologous
HL_8B0X_043
HL_27670.6
HL_9W0N_0111/1/382:392No text annotation
homologous
HL_8B0X_044
HL_91503.8
HL_9W0N_0121/1/410:417No text annotation
homologous
HL_8B0X_045
HL_30680.5
HL_9W0N_0131/1/462:467No text annotation
homologous
HL_8B0X_046
HL_34789.6
HL_9W0N_0141/1/487:493No text annotation
homologous
HL_8B0X_047
HL_34789.6
HL_9W0N_0161/1/566:575T-loop with 2 stacked bulged bases
homologous
HL_8B0X_048
HL_33597.6
HL_9W0N_0171/1/611:617No text annotation
geometric
HL_4WRT_001
HL_21043.1
HL_9W0N_0181/1/629:634No text annotation
homologous
HL_8B0X_050
HL_34789.6
HL_9W0N_0191/1/641:647No text annotation
homologous
HL_8B0X_051
HL_07380.1
HL_9W0N_0201/1/712:719No text annotation
homologous
HL_8B0X_052
HL_98423.5
HL_9W0N_0211/1/744:753No text annotation
homologous
HL_7A0S_022
HL_50204.3
HL_9W0N_0221/1/779:785UNCG variation
homologous
HL_7A0S_023
HL_23875.1
HL_9W0N_0231/1/826:831No text annotation
homologous
HL_8B0X_055
HL_27530.3
HL_9W0N_0251/1/955:962GNRA
homologous
HL_7A0S_026
HL_34789.6
HL_9W0N_0261/1/978:985No text annotation
homologous
HL_8B0X_058
HL_47171.3
HL_9W0N_0291/1/1171:1178No text annotation
HL_9W0N_0301/1/1222:1227No text annotation
homologous
HL_8B0X_059
HL_34789.6
HL_9W0N_0311/1/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_8B0X_060
HL_33597.6
HL_9W0N_0321/1/1324:1330No text annotation
homologous
HL_8B0X_061
HL_49081.2
HL_9W0N_0331/1/1363:1368No text annotation
homologous
HL_8B0X_062
HL_34789.6
HL_9W0N_0341/1/1389:1398No text annotation
homologous
HL_8B0X_063
HL_77449.3
HL_9W0N_0351/1/1451:1459No text annotation
homologous
HL_8B0X_064
HL_00557.1
HL_9W0N_0361/1/1492:1498No text annotation
homologous
HL_8B0X_065
HL_49081.2
HL_9W0N_0381/1/1565:1568No text annotation
homologous
HL_8B0X_067
HL_90436.5
HL_9W0N_0391/1/1612:1619No text annotation
homologous
HL_8B0X_068
HL_28592.4
HL_9W0N_0401/1/1630:1636No text annotation
homologous
HL_8B0X_069
HL_34789.6
HL_9W0N_0411/1/1691:1696UNCG
homologous
HL_7A0S_042
HL_61337.6
HL_9W0N_0421/1/1727:1733No text annotation
geometric
HL_8OI5_017
HL_44506.4
HL_9W0N_0431/1/1752:1756No text annotation
homologous
HL_8B0X_072
HL_80709.5
HL_9W0N_0441/1/1777:1787No text annotation
homologous
HL_8B0X_073
HL_87681.3
HL_9W0N_0451/1/1806:1811No text annotation
homologous
HL_8B0X_074
HL_37569.4
HL_9W0N_0471/1/1910:1920No text annotation
geometric
HL_9DFE_046
HL_82185.3
HL_9W0N_0481/1/1949:1957No text annotation
homologous
HL_8B0X_077
HL_33350.1
HL_9W0N_0491/1/2027:2036No text annotation
homologous
HL_8B0X_078
HL_78372.3
HL_9W0N_0511/1/2209:2215No text annotation
homologous
HL_8B0X_079
HL_33632.1
HL_9W0N_0521/1/2248:2256LSU P loop
homologous
HL_7A0S_052
HL_11974.4
HL_9W0N_0531/1/2264:2276No text annotation
homologous
HL_8B0X_081
HL_02042.3
HL_9W0N_0541/1/2304:2312No text annotation
homologous
HL_8B0X_101
HL_02452.3
HL_9W0N_0551/1/2324:2331No text annotation
homologous
HL_8B0X_083
HL_52651.4
HL_9W0N_0561/1/2356:2361No text annotation
homologous
HL_8B0X_084
HL_34789.6
HL_9W0N_0571/1/2374:2379No text annotation
homologous
HL_8B0X_085
HL_34789.6
HL_9W0N_0581/1/2404:2413No text annotation
homologous
HL_8B0X_086
HL_51853.2
HL_9W0N_0591/1/2471:2479No text annotation
homologous
HL_8B0X_087
HL_52011.3
HL_9W0N_0601/1/2528:2535No text annotation
homologous
HL_8B0X_088
HL_02262.1
HL_9W0N_0611/1/2551:2557LSU A loop
homologous
HL_8B0X_089
HL_02262.1
HL_9W0N_0621/1/2594:2599No text annotation
homologous
HL_8B0X_090
HL_34789.6
HL_9W0N_0631/1/2658:2663No text annotation
homologous
HL_8B0X_091
HL_34789.6
HL_9W0N_0641/1/2701:2706No text annotation
homologous
HL_8B0X_092
HL_12125.4
HL_9W0N_0651/1/2745:2759No text annotation
homologous
HL_8B0X_093
HL_53269.4
HL_9W0N_0661/1/2795:2801UNCG variation
geometric
HL_6VMY_004
HL_34080.1
HL_9W0N_0671/1/2819:2827No text annotation
homologous
HL_8B0X_095
HL_37889.3
HL_9W0N_0681/1/2856:2861No text annotation
homologous
HL_8B0X_096
HL_34789.6
HL_9W0N_0691/2/34:48No text annotation
geometric
HL_8B0X_102
HL_97756.4
HL_9W0N_0701/2/38:44No text annotation
homologous
HL_9H3G_074
HL_59381.4
HL_9W0N_0711/2/86:90No text annotation
homologous
HL_8B0X_098
HL_90436.5
HL_9W0N_0721/3/12:22No text annotation
homologous
HL_8B0X_001
HL_73535.3
HL_9W0N_0741/3/158:163No text annotation
homologous
HL_8B0X_002
HL_34789.6
HL_9W0N_0751/3/186:191No text annotation
homologous
HL_8B0X_003
HL_34789.6
HL_9W0N_0771/3/259:267No text annotation
homologous
HL_8B0X_005
HL_87268.4
HL_9W0N_0781/3/296:301No text annotation
homologous
HL_8B0X_006
HL_34789.6
HL_9W0N_0791/3/320:333No text annotation
homologous
HL_8B0X_007
HL_39665.1
HL_9W0N_0801/3/342:347No text annotation
homologous
HL_8B0X_008
HL_61337.6
HL_9W0N_0811/3/379:384No text annotation
homologous
HL_8B0X_009
HL_34789.6
HL_9W0N_0821/3/419:424No text annotation
homologous
HL_8B0X_010
HL_61337.6
HL_9W0N_0831/3/462:470No text annotation
homologous
HL_8B0X_011
HL_98423.5
HL_9W0N_0841/3/522:527No text annotation
homologous
HL_8B0X_099
HL_34789.6
HL_9W0N_0851/3/617:623No text annotation
homologous
HL_8B0X_013
HL_27656.1
HL_9W0N_0861/3/689:698No text annotation
homologous
HL_8B0X_014
HL_38491.4
HL_9W0N_0871/3/726:731No text annotation
homologous
HL_8B0X_015
HL_34789.6
HL_9W0N_0881/3/786:796No text annotation
homologous
HL_8B0X_016
HL_38491.4
HL_9W0N_0901/3/862:867No text annotation
homologous
HL_8B0X_017
HL_34789.6
HL_9W0N_0911/3/897:902No text annotation
homologous
HL_8B0X_018
HL_34789.6
HL_9W0N_0921/3/963:972No text annotation
homologous
HL_8B0X_019
HL_97521.3
HL_9W0N_0941/3/1076:1081No text annotation
homologous
HL_8B0X_021
HL_34789.6
HL_9W0N_0951/3/1089:1096No text annotation
homologous
HL_8B0X_022
HL_63894.4
HL_9W0N_0961/3/1133:1141No text annotation
HL_9W0N_0971/3/1165:1171No text annotation
homologous
HL_8B0X_024
HL_34789.6
HL_9W0N_0981/3/1265:1270No text annotation
homologous
HL_8B0X_025
HL_34789.6
HL_9W0N_0991/3/1314:1323No text annotation
homologous
HL_8B0X_026
HL_93658.1
HL_9W0N_1001/3/1356:1366No text annotation
homologous
HL_8B0X_027
HL_86432.3
HL_9W0N_1011/3/1449:1454No text annotation
homologous
HL_8B0X_028
HL_61337.6
HL_9W0N_1021/3/1515:1520No text annotation
homologous
HL_8B0X_029
HL_34789.6

Problematic loops

#loop idProblemSequence
HL_9W0N_015No text annotation
HL_9W0N_024No text annotation
HL_9W0N_027No text annotation
HL_9W0N_028GNRA with tandem sheared
HL_9W0N_037No text annotation
HL_9W0N_046No text annotation
HL_9W0N_050No text annotation
HL_9W0N_073No text annotation
HL_9W0N_076No text annotation
HL_9W0N_089No text annotation
HL_9W0N_093No text annotation
HL_9W0N_103tRNA D-loop
HL_9W0N_104tRNA anticodon loop with synthetase
HL_9W0N_105T-loop with 2 stacked bulged bases
HL_9W0N_106No text annotation
HL_9W0N_107No text annotation
HL_9W0N_108T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9W0N_0011/1/24:30,
1/1/510:516
No text annotation
homologous
IL_8B0X_065
IL_22311.3
IL_9W0N_0021/1/36:37,
1/1/442:444
Single bulged A
homologous
IL_7A0S_002
IL_14190.4
IL_9W0N_0031/1/43:44,
1/1/434:436
No text annotation
homologous
IL_8B0X_067
IL_98469.1
IL_9W0N_0041/1/81:85,
1/1/97:105
Kink-turn
homologous
IL_7A0S_004
IL_94910.1
IL_9W0N_0051/1/183:184,
1/1/212:214
No text annotation
homologous
IL_8B0X_069
IL_15011.5
IL_9W0N_0061/1/239:245,
1/1/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_8B0X_071
IL_02666.3
IL_9W0N_0071/1/269:271,
1/1/366:370
No text annotation
homologous
IL_8B0X_072
NA
IL_9W0N_0081/1/274:281,
1/1/359:363
No text annotation
homologous
IL_8B0X_073
IL_22028.1
IL_9W0N_0101/1/293:295,
1/1/343:347
No text annotation
homologous
IL_8B0X_074
IL_76658.1
IL_9W0N_0111/1/481:484,
1/1/496:509
No text annotation
geometric
IL_8B0X_075
IL_44923.3
IL_9W0N_0121/1/536:539,
1/1/554:557
Double sheared
homologous
IL_8B0X_076
IL_58355.4
IL_9W0N_0131/1/606:610,
1/1/618:622
No text annotation
homologous
IL_8B0X_078
IL_66798.3
IL_9W0N_0141/1/672:674,
1/1/806:808
Isolated non-canonical cWW pair
homologous
IL_8B0X_079
IL_01003.6
IL_9W0N_0151/1/674:678,
1/1/799:806
No text annotation
homologous
IL_8B0X_080
IL_73855.3
IL_9W0N_0161/1/697:698,
1/1/763:765
No text annotation
homologous
IL_8B0X_081
IL_14190.4
IL_9W0N_0171/1/702:703,
1/1/728:730
No text annotation
homologous
IL_8B0X_082
IL_28408.4
IL_9W0N_0181/1/703:707,
1/1/724:728
No text annotation
homologous
IL_8B0X_083
IL_15190.4
IL_9W0N_0191/1/738:740,
1/1/757:758
No text annotation
homologous
IL_8B0X_084
IL_48076.10
IL_9W0N_0201/1/775:777,
1/1/787:791
No text annotation
homologous
IL_8B0X_085
IL_89509.3
IL_9W0N_0211/1/844:847,
1/1/933:934
No text annotation
IL_9W0N_0221/1/844:848,
1/1/930:934
No text annotation
IL_9W0N_0231/1/847:848,
1/1/930:933
No text annotation
homologous
IL_8B0X_088
IL_36175.2
IL_9W0N_0241/1/850:851,
1/1/926:928
No text annotation
homologous
IL_8B0X_089
IL_15011.5
IL_9W0N_0251/1/856:862,
1/1/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_8B0X_090
IL_94128.3
IL_9W0N_0261/1/862:863,
1/1/913:915
No text annotation
homologous
IL_8B0X_091
IL_28408.4
IL_9W0N_0271/1/864:868,
1/1/909:912
No text annotation
homologous
IL_8B0X_092
IL_16301.3
IL_9W0N_0281/1/870:872,
1/1/905:907
No text annotation
homologous
IL_8B0X_093
IL_71625.5
IL_9W0N_0291/1/875:879,
1/1/898:902
No text annotation
homologous
IL_8B0X_094
IL_87767.4
IL_9W0N_0311/1/994:996,
1/1/1159:1160
No text annotation
homologous
IL_8B0X_096
IL_05642.5
IL_9W0N_0321/1/998:1002,
1/1/1153:1157
UAA/GAN
homologous
IL_7A0S_033
IL_08938.3
IL_9W0N_0331/1/1004:1011,
1/1/1150:1151
No text annotation
homologous
IL_8B0X_098
IL_46868.2
IL_9W0N_0341/1/1011:1013,
1/1/1149:1150
No text annotation
homologous
IL_8B0X_099
IL_97561.7
IL_9W0N_0351/1/1018:1024,
1/1/1140:1144
Kink-turn related
homologous
IL_8B0X_100
IL_57188.6
IL_9W0N_0361/1/1024:1030,
1/1/1124:1140
No text annotation
homologous
IL_8B0X_101
IL_50715.4
IL_9W0N_0371/1/1031:1034,
1/1/1121:1123
No text annotation
homologous
IL_8B0X_102
IL_76400.2
IL_9W0N_0381/1/1038:1041,
1/1/1114:1117
Tandem non-canonical cWW pairs
homologous
IL_8B0X_103
IL_15225.4
IL_9W0N_0391/1/1043:1051,
1/1/1108:1112
Kink-turn
homologous
IL_8B0X_104
IL_99692.4
IL_9W0N_0421/1/1196:1198,
1/1/1247:1250
No text annotation
homologous
IL_8B0X_105
IL_84227.1
IL_9W0N_0431/1/1202:1206,
1/1/1240:1243
No text annotation
homologous
IL_8B0X_106
NA
IL_9W0N_0441/1/1208:1215,
1/1/1234:1238
Kink-turn
homologous
IL_8B0X_107
IL_90775.3
IL_9W0N_0451/1/1319:1323,
1/1/1331:1333
No text annotation
homologous
IL_8B0X_110
IL_63596.14
IL_9W0N_0461/1/1351:1355,
1/1/1376:1380
No text annotation
homologous
IL_8B0X_111
IL_89021.4
IL_9W0N_0471/1/1357:1361,
1/1/1370:1374
No text annotation
homologous
IL_8B0X_112
IL_05821.3
IL_9W0N_0481/1/1415:1416,
1/1/1582:1587
No text annotation
homologous
IL_8B0X_113
NA
IL_9W0N_0491/1/1417:1421,
1/1/1577:1581
UAA/GAN
homologous
IL_8B0X_114
IL_08938.3
IL_9W0N_0501/1/1432:1435,
1/1/1557:1561
No text annotation
homologous
IL_8B0X_115
IL_60418.1
IL_9W0N_0511/1/1437:1440,
1/1/1551:1555
No text annotation
homologous
IL_8B0X_116
IL_74317.1
IL_9W0N_0521/1/1450:1451,
1/1/1459:1461
No text annotation
homologous
IL_8B0X_117
IL_97561.7
IL_9W0N_0531/1/1468:1471,
1/1/1520:1524
No text annotation
homologous
IL_8B0X_118
IL_68574.5
IL_9W0N_0541/1/1474:1478,
1/1/1513:1517
tSH-tWH-tHS
homologous
IL_8B0X_119
IL_38862.5
IL_9W0N_0551/1/1481:1482,
1/1/1507:1510
No text annotation
homologous
IL_8B0X_120
IL_52564.1
IL_9W0N_0561/1/1489:1491,
1/1/1499:1500
No text annotation
homologous
IL_8B0X_121
IL_14190.4
IL_9W0N_0571/1/1526:1529,
1/1/1542:1546
UAA/GAN variation
homologous
IL_8B0X_122
IL_45790.3
IL_9W0N_0581/1/1651:1656,
1/1/2004:2006
No text annotation
homologous
IL_7A0S_059
IL_12566.6
IL_9W0N_0591/1/1663:1665,
1/1/1995:1997
No text annotation
homologous
IL_8B0X_124
IL_10432.3
IL_9W0N_0601/1/1666:1674,
1/1/1990:1994
No text annotation
homologous
IL_8B0X_180
IL_80252.3
IL_9W0N_0611/1/1686:1691,
1/1/1696:1702
No text annotation
homologous
IL_8B0X_127
IL_20700.3
IL_9W0N_0621/1/1712:1718,
1/1/1742:1746
6x5 Sarcin-Ricin; G-bulge
homologous
IL_8B0X_128
IL_82100.1
IL_9W0N_0631/1/1720:1724,
1/1/1736:1740
No text annotation
homologous
IL_8B0X_129
IL_70744.1
IL_9W0N_0641/1/1770:1771,
1/1/1980:1982
No text annotation
homologous
IL_8B0X_131
IL_14190.4
IL_9W0N_0651/1/1798:1804,
1/1/1813:1821
Kink-turn related
homologous
IL_8B0X_132
IL_17069.6
IL_9W0N_0661/1/1837:1842,
1/1/1898:1903
No text annotation
IL_9W0N_0671/1/1846:1849,
1/1/1893:1894
No text annotation
homologous
IL_8B0X_135
IL_73108.4
IL_9W0N_0681/1/1851:1860,
1/1/1882:1891
No text annotation
homologous
IL_8B0X_181
NA
IL_9W0N_0691/1/1864:1867,
1/1/1874:1878
No text annotation
homologous
IL_8B0X_136
IL_77691.7
IL_9W0N_0701/1/1933:1945,
1/1/1961:1967
No text annotation
IL_9W0N_0711/1/2050:2052,
1/1/2617:2618
No text annotation
homologous
IL_8B0X_139
IL_48076.10
IL_9W0N_0721/1/2054:2056,
1/1/2612:2615
No text annotation
homologous
IL_8B0X_140
IL_80025.3
IL_9W0N_0731/1/2067:2069,
1/1/2442:2443
No text annotation
homologous
IL_8B0X_182
IL_97561.7
IL_9W0N_0741/1/2070:2071,
1/1/2438:2441
No text annotation
homologous
IL_8B0X_143
IL_98469.1
IL_9W0N_0751/1/2081:2083,
1/1/2236:2239
No text annotation
homologous
IL_8B0X_144
IL_87316.4
IL_9W0N_0761/1/2085:2087,
1/1/2232:2234
No text annotation
homologous
IL_8B0X_145
IL_71625.5
IL_9W0N_0801/1/2202:2204,
1/1/2220:2221
No text annotation
homologous
IL_8B0X_146
IL_97561.7
IL_9W0N_0811/1/2350:2353,
1/1/2364:2367
Double sheared
homologous
IL_8B0X_148
IL_58355.4
IL_9W0N_0821/1/2401:2403,
1/1/2414:2415
No text annotation
geometric
IL_9H3G_006
IL_97561.7
IL_9W0N_0831/1/2453:2454,
1/1/2498:2500
No text annotation
homologous
IL_8B0X_183
IL_15011.5
IL_9W0N_0841/1/2454:2455,
1/1/2496:2498
No text annotation
homologous
IL_8B0X_184
IL_48076.10
IL_9W0N_0851/1/2457:2461,
1/1/2489:2494
No text annotation
IL_9W0N_0861/1/2466:2470,
1/1/2480:2484
No text annotation
homologous
IL_8B0X_153
IL_87767.4
IL_9W0N_0871/1/2507:2508,
1/1/2580:2582
Major groove platform
homologous
IL_7A0S_088
IL_46637.4
IL_9W0N_0881/1/2510:2512,
1/1/2574:2578
No text annotation
homologous
IL_8B0X_155
IL_30722.1
IL_9W0N_0891/1/2512:2513,
1/1/2571:2574
No text annotation
homologous
IL_8B0X_156
IL_44609.4
IL_9W0N_0901/1/2522:2523,
1/1/2540:2543
No text annotation
homologous
IL_8B0X_157
IL_94991.3
IL_9W0N_0911/1/2591:2592,
1/1/2601:2603
No text annotation
homologous
IL_8B0X_159
IL_14190.4
IL_9W0N_0921/1/2636:2640,
1/1/2774:2782
No text annotation
homologous
IL_8B0X_160
IL_04638.4
IL_9W0N_0931/1/2652:2658,
1/1/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_8B0X_161
IL_16458.6
IL_9W0N_0941/1/2680:2684,
1/1/2725:2727
No text annotation
homologous
IL_8B0X_162
IL_63596.14
IL_9W0N_0951/1/2687:2691,
1/1/2718:2722
No text annotation
homologous
IL_8B0X_163
IL_82016.1
IL_9W0N_0961/1/2695:2696,
1/1/2711:2714
No text annotation
homologous
IL_8B0X_164
IL_44609.4
IL_9W0N_0971/1/2737:2742,
1/1/2762:2767
No text annotation
homologous
IL_8B0X_165
IL_91079.1
IL_9W0N_0981/1/2806:2811,
1/1/2889:2892
No text annotation
homologous
IL_8B0X_167
NA
IL_9W0N_0991/1/2838:2839,
1/1/2878:2880
No text annotation
homologous
IL_8B0X_168
IL_77710.2
IL_9W0N_1001/1/2843:2846,
1/1/2870:2874
No text annotation
homologous
IL_8B0X_169
IL_60988.4
IL_9W0N_1011/1/2847:2852,
1/1/2865:2869
No text annotation
homologous
IL_8B0X_170
IL_48489.3
IL_9W0N_1021/2/17:18,
1/2/65:67
Major groove intercalation
homologous
IL_4V9F_101
IL_14190.4
IL_9W0N_1031/2/23:28,
1/2/56:60
No text annotation
homologous
IL_8B0X_172
IL_18472.5
IL_9W0N_1041/2/30:31,
1/2/51:54
No text annotation
homologous
IL_9H3G_149
IL_73108.4
IL_9W0N_1051/2/34:38,
1/2/44:48
Symmetric double minor groove platform
homologous
IL_8B0X_174
IL_58103.14
IL_9W0N_1061/2/71:79,
1/2/97:105
Bacterial 5S Loop E
homologous
IL_8B0X_175
IL_71138.1
IL_9W0N_1071/3/30:32,
1/3/552:553
No text annotation
homologous
IL_8B0X_001
IL_28408.4
IL_9W0N_1081/3/44:45,
1/3/396:398
No text annotation
homologous
IL_8B0X_002
IL_14190.4
IL_9W0N_1091/3/47:52,
1/3/359:361
No text annotation
geometric
IL_8B0X_003
IL_32983.3
IL_9W0N_1101/3/54:56,
1/3/356:357
No text annotation
homologous
IL_8B0X_004
IL_41261.1
IL_9W0N_1111/3/63:66,
1/3/103:104
No text annotation
homologous
IL_8B0X_005
IL_71421.5
IL_9W0N_1121/3/67:69,
1/3/99:102
No text annotation
homologous
IL_8B0X_006
IL_05502.2
IL_9W0N_1131/3/70:73,
1/3/97:98
No text annotation
homologous
IL_8B0X_007
IL_87975.2
IL_9W0N_1141/3/75:78,
1/3/91:95
No text annotation
IL_9W0N_1151/3/128:131,
1/3/231:233
No text annotation
homologous
IL_8B0X_009
IL_76400.2
IL_9W0N_1161/3/132:136,
1/3/227:230
Minor groove platform related
homologous
IL_8B0X_010
IL_60988.4
IL_9W0N_1171/3/144:146,
1/3/176:178
Isolated cWH basepair
homologous
IL_8B0X_011
IL_10892.4
IL_9W0N_1181/3/147:153,
1/3/168:175
No text annotation
homologous
IL_8B0X_012
IL_24485.3
IL_9W0N_1201/3/242:247,
1/3/277:284
Kink-turn with non-sequential stacking
homologous
IL_8B0X_013
IL_46174.6
IL_9W0N_1211/3/249:252,
1/3/274:275
No text annotation
homologous
IL_8B0X_014
IL_22002.1
IL_9W0N_1221/3/292:293,
1/3/304:308
No text annotation
homologous
IL_8B0X_015
IL_06671.3
IL_9W0N_1231/3/367:369,
1/3/392:393
No text annotation
homologous
IL_8B0X_016
IL_97561.7
IL_9W0N_1241/3/371:375,
1/3/389:390
No text annotation
homologous
IL_8B0X_017
IL_26900.3
IL_9W0N_1251/3/375:376,
1/3/387:389
No text annotation
homologous
IL_8B0X_018
IL_28408.4
IL_9W0N_1261/3/409:416,
1/3/427:433
No text annotation
homologous
IL_8B0X_019
IL_62329.1
IL_9W0N_1271/3/440:442,
1/3/492:497
No text annotation
geometric
IL_8B0X_020
IL_02111.1
IL_9W0N_1281/3/446:450,
1/3/483:488
tWW-tWH-tHS
homologous
IL_8B0X_021
IL_82100.1
IL_9W0N_1291/3/450:455,
1/3/477:483
No text annotation
homologous
IL_8B0X_022
NA
IL_9W0N_1301/3/504:511,
1/3/540:541
No text annotation
homologous
IL_8B0X_023
IL_11411.3
IL_9W0N_1311/3/514:521,
1/3/528:537
No text annotation
IL_9W0N_1321/3/569:575,
1/3/880:881
No text annotation
homologous
IL_8B0X_025
IL_20847.3
IL_9W0N_1331/3/580:584,
1/3/757:761
No text annotation
homologous
IL_8B0X_026
IL_05821.3
IL_9W0N_1341/3/594:596,
1/3/644:645
No text annotation
homologous
IL_8B0X_027
IL_48076.10
IL_9W0N_1351/3/597:598,
1/3/640:643
No text annotation
homologous
IL_8B0X_028
IL_73108.4
IL_9W0N_1361/3/605:612,
1/3/628:633
No text annotation
homologous
IL_8B0X_029
IL_04211.1
IL_9W0N_1371/3/654:655,
1/3/751:754
No text annotation
geometric
IL_8B0X_030
IL_74641.4
IL_9W0N_1381/3/659:660,
1/3/745:747
No text annotation
homologous
IL_8B0X_031
IL_15011.5
IL_9W0N_1391/3/662:666,
1/3/740:743
Tandem non-canonical cWW pairs
homologous
IL_8B0X_032
IL_15225.4
IL_9W0N_1401/3/673:677,
1/3/713:717
No text annotation
homologous
IL_8B0X_176
IL_71154.5
IL_9W0N_1411/3/684:688,
1/3/699:706
Kink-turn
homologous
IL_8B0X_034
IL_71972.2
IL_9W0N_1421/3/774:778,
1/3/804:805
No text annotation
homologous
IL_8B0X_035
IL_29346.3
IL_9W0N_1431/3/779:783,
1/3/799:803
No text annotation
homologous
IL_8B0X_036
IL_05821.3
IL_9W0N_1441/3/887:894,
1/3/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_8B0X_037
IL_84044.3
IL_9W0N_1451/3/922:923,
1/3/1393:1395
No text annotation
homologous
IL_8B0X_038
IL_14190.4
IL_9W0N_1461/3/925:927,
1/3/1390:1391
No text annotation
homologous
IL_8B0X_039
IL_28408.4
IL_9W0N_1471/3/933:935,
1/3/1380:1384
No text annotation
homologous
IL_8B0X_040
IL_03866.1
IL_9W0N_1481/3/953:954,
1/3/1226:1228
No text annotation
homologous
IL_8B0X_041
IL_98469.1
IL_9W0N_1491/3/993:997,
1/3/1044:1045
No text annotation
geometric
IL_8B0X_042
IL_49794.1
IL_9W0N_1521/3/1048:1050,
1/3/1208:1209
No text annotation
homologous
IL_8B0X_044
IL_97561.7
IL_9W0N_1531/3/1052:1056,
1/3/1204:1206
No text annotation
homologous
IL_8B0X_046
IL_82453.3
IL_9W0N_1541/3/1057:1058,
1/3/1199:1203
No text annotation
homologous
IL_8B0X_047
IL_41261.1
IL_9W0N_1551/3/1060:1061,
1/3/1195:1197
No text annotation
homologous
IL_8B0X_048
IL_14190.4
IL_9W0N_1561/3/1061:1063,
1/3/1193:1195
No text annotation
homologous
IL_8B0X_049
IL_71625.5
IL_9W0N_1571/3/1124:1128,
1/3/1144:1149
No text annotation
homologous
IL_8B0X_050
IL_38603.1
IL_9W0N_1581/3/1129:1132,
1/3/1142:1143
No text annotation
homologous
IL_8B0X_051
IL_87975.2
IL_9W0N_1591/3/1158:1161,
1/3/1175:1181
No text annotation
geometric
IL_8B0X_052
IL_32376.2
IL_9W0N_1601/3/1247:1253,
1/3/1284:1290
No text annotation
homologous
IL_8B0X_053
IL_12056.1
IL_9W0N_1611/3/1255:1258,
1/3/1277:1282
No text annotation
homologous
IL_8B0X_054
IL_08849.1
IL_9W0N_1621/3/1259:1263,
1/3/1272:1276
No text annotation
homologous
IL_8B0X_055
IL_87767.4
IL_9W0N_1631/3/1303:1308,
1/3/1329:1334
No text annotation
homologous
IL_8B0X_056
IL_28265.1
IL_9W0N_1641/3/1399:1401,
1/3/1501:1504
No text annotation
homologous
IL_8B0X_057
IL_18228.3
IL_9W0N_1651/3/1401:1404,
1/3/1497:1501
No text annotation
homologous
IL_8B0X_058
IL_25873.4
IL_9W0N_1661/3/1405:1407,
1/3/1494:1496
Isolated non-canonical cWW pair
homologous
IL_8B0X_177
IL_01003.6
IL_9W0N_1671/3/1407:1409,
1/3/1491:1494
No text annotation
geometric
IL_9H3G_236
IL_29925.3
IL_9W0N_1681/3/1412:1414,
1/3/1486:1488
Isolated non-canonical cWW pair
homologous
IL_8B0X_060
IL_01003.6
IL_9W0N_1691/3/1416:1419,
1/3/1481:1484
Double sheared
homologous
IL_8B0X_061
IL_58355.4
IL_9W0N_1701/3/1430:1435,
1/3/1466:1470
No text annotation
homologous
IL_8B0X_062
IL_47352.3
IL_9W0N_1711/3/1440:1442,
1/3/1460:1461
No text annotation
homologous
IL_8B0X_063
IL_41261.1
IL_9W0N_1721/3/1445:1448,
1/3/1455:1457
No text annotation
homologous
IL_8B0X_064
IL_05502.2

Problematic loops

#loop idProblemSequence
IL_9W0N_009No text annotation
IL_9W0N_030No text annotation
IL_9W0N_040No text annotation
IL_9W0N_041No text annotation
IL_9W0N_077Isolated non-canonical cWW pair
IL_9W0N_078No text annotation
IL_9W0N_079No text annotation
IL_9W0N_119No text annotation
IL_9W0N_150No text annotation
IL_9W0N_151No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9W0N_0011/1/30:31,
1/1/474:481,
1/1/509:510
No text annotation
geometric
J3_8B0X_014
J3_68715.3
J3_9W0N_0021/1/30:31,
1/1/474:484,
1/1/496:510
No text annotation
homologous
J3_8B0X_032
J3_17917.3
J3_9W0N_0031/1/32:35,
1/1/445:461,
1/1/468:473
No text annotation
homologous
J3_8B0X_033
J3_07616.3
J3_9W0N_0041/1/56:57,
1/1/70:76,
1/1/110:114
No text annotation
homologous
J3_8B0X_015
J3_01004.3
J3_9W0N_0051/1/297:301,
1/1/316:325,
1/1/337:341
No text annotation
homologous
J3_8B0X_034
J3_77124.1
J3_9W0N_0061/1/683:689,
1/1/773:775,
1/1/791:794
No text annotation
homologous
J3_8B0X_016
J3_46658.3
J3_9W0N_0071/1/698:700,
1/1/732:736,
1/1/760:763
No text annotation
homologous
J3_8B0X_017
J3_69816.3
J3_9W0N_0091/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642
No text annotation
homologous
J3_8B0X_018
J3_32852.7
J3_9W0N_0101/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622
No text annotation
homologous
J3_8B0X_019
J3_47341.1
J3_9W0N_0111/1/1344:1349,
1/1/1382:1385,
1/1/1402:1403
No text annotation
homologous
J3_8B0X_020
NA
J3_9W0N_0121/1/1424:1429,
1/1/1564:1565,
1/1/1568:1574
No text annotation
homologous
J3_8B0X_035
J3_34864.3
J3_9W0N_0131/1/2091:2093,
1/1/2196:2200,
1/1/2223:2228
No text annotation
homologous
J3_8B0X_021
J3_17460.1
J3_9W0N_0141/1/2282:2284,
1/1/2384:2395,
1/1/2421:2427
No text annotation
homologous
J3_8B0X_036
J3_04772.3
J3_9W0N_0151/1/2295:2299,
1/1/2317:2323,
1/1/2332:2337
No text annotation
J3_9W0N_0161/1/2517:2520,
1/1/2545:2547,
1/1/2561:2567
No text annotation
homologous
J3_8B0X_023
J3_32601.6
J3_9W0N_0171/1/2789:2791,
1/1/2805:2806,
1/1/2892:2894
No text annotation
homologous
J3_8B0X_024
NA
J3_9W0N_0181/1/2812:2815,
1/1/2831:2836,
1/1/2882:2888
No text annotation
homologous
J3_8B0X_025
NA
J3_9W0N_0191/2/10:16,
1/2/68:70,
1/2/106:110
No text annotation
homologous
J3_8B0X_026
NA
J3_9W0N_0201/3/46:47,
1/3/361:367,
1/3/393:395
No text annotation
geometric
J3_8B0X_001
J3_58657.3
J3_9W0N_0211/3/46:52,
1/3/359:367,
1/3/393:395
No text annotation
homologous
J3_8B0X_027
J3_63856.3
J3_9W0N_0221/3/586:588,
1/3/651:654,
1/3/754:755
No text annotation
geometric
J3_8B0X_002
J3_01633.3
J3_9W0N_0231/3/586:588,
1/3/651:655,
1/3/751:755
No text annotation
homologous
J3_8B0X_028
J3_17385.7
J3_9W0N_0241/3/672:673,
1/3/717:725,
1/3/732:734
No text annotation
homologous
J3_8B0X_003
J3_74074.1
J3_9W0N_0251/3/826:829,
1/3/857:861,
1/3/868:874
No text annotation
homologous
J3_8B0X_004
J3_02285.1
J3_9W0N_0261/3/936:939,
1/3/1344:1350,
1/3/1372:1379
No text annotation
homologous
J3_8B0X_005
J3_85722.3
J3_9W0N_0271/3/943:946,
1/3/1235:1237,
1/3/1337:1340
No text annotation
homologous
J3_8B0X_006
J3_44359.3
J3_9W0N_0281/3/955:962,
1/3/973:984,
1/3/1221:1225
No text annotation
homologous
J3_8B0X_007
J3_88451.3
J3_9W0N_0291/3/990:993,
1/3/1045:1047,
1/3/1210:1215
No text annotation
geometric
J3_4LFB_005
J3_84394.1
J3_9W0N_0301/3/990:997,
1/3/1044:1047,
1/3/1210:1215
No text annotation
homologous
J3_8B0X_029
J3_28881.1
J3_9W0N_0311/3/1063:1068,
1/3/1107:1113,
1/3/1187:1193
No text annotation
homologous
J3_8B0X_010
J3_01343.1
J3_9W0N_0321/3/1073:1074,
1/3/1083:1086,
1/3/1099:1102
No text annotation
homologous
J3_8B0X_030
J3_11018.1
J3_9W0N_0331/3/1116:1118,
1/3/1155:1158,
1/3/1181:1184
No text annotation
geometric
J3_8B0X_012
J3_82365.7
J3_9W0N_0341/3/1116:1118,
1/3/1155:1161,
1/3/1175:1184
No text annotation
homologous
J3_8B0X_031
J3_40706.2
J3_9W0N_0351/3/1237:1241,
1/3/1296:1303,
1/3/1334:1337
No text annotation
homologous
J3_8B0X_013
J3_03192.3
J4_9W0N_0011/1/268:269,
1/1/370:375,
1/1/399:406,
1/1/421:424
No text annotation
homologous
J4_8B0X_004
J4_94698.3
J4_9W0N_0021/1/601:604,
1/1/624:628,
1/1/635:638,
1/1/650:656
No text annotation
homologous
J4_8B0X_006
NA
J4_9W0N_0031/1/1270:1276,
1/1/1294:1295,
1/1/1645:1648,
1/1/2009:2010
No text annotation
homologous
J4_8B0X_007
J4_19484.1
J4_9W0N_0041/1/1310:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1604
No text annotation
homologous
J4_8B0X_008
J4_77353.2
J4_9W0N_0051/1/1444:1445,
1/1/1466:1467,
1/1/1525:1526,
1/1/1546:1547
No text annotation
homologous
J4_8B0X_010
J4_75575.3
J4_9W0N_0061/1/1772:1776,
1/1/1788:1792,
1/1/1827:1830,
1/1/1975:1979
No text annotation
homologous
J4_8B0X_011
J4_61477.6
J4_9W0N_0071/1/1833:1835,
1/1/1905:1906,
1/1/1924:1933,
1/1/1967:1972
No text annotation
homologous
J4_8B0X_012
J4_42306.3
J4_9W0N_0081/1/2285:2289,
1/1/2343:2347,
1/1/2370:2372,
1/1/2381:2383
No text annotation
homologous
J4_8B0X_013
J4_98139.1
J4_9W0N_0091/1/2643:2646,
1/1/2674:2676,
1/1/2731:2735,
1/1/2769:2771
No text annotation
homologous
J4_8B0X_014
J4_77044.5
J4_9W0N_0101/3/115:122,
1/3/239:240,
1/3/286:289,
1/3/311:312
No text annotation
homologous
J4_8B0X_001
J4_90044.1
J4_9W0N_0111/3/142:144,
1/3/178:184,
1/3/193:198,
1/3/219:221
No text annotation
homologous
J4_8B0X_002
NA
J4_9W0N_0121/3/575:577,
1/3/764:769,
1/3/810:821,
1/3/879:880
No text annotation
homologous
J4_8B0X_003
J4_14595.3
J5_9W0N_0011/1/47:54,
1/1/116:121,
1/1/130:131,
1/1/148:150,
1/1/176:178
No text annotation
homologous
J5_8B0X_004
J5_27223.3
J5_9W0N_0021/1/531:533,
1/1/560:566,
1/1/575:579,
1/1/1261:1269,
1/1/2011:2018
No text annotation
J5_9W0N_0031/1/584:589,
1/1/668:671,
1/1/809:812,
1/1/1195:1196,
1/1/1250:1256
No text annotation
homologous
J5_8B0X_006
J5_74302.6
J5_9W0N_0041/1/1674:1682,
1/1/1706:1707,
1/1/1751:1752,
1/1/1756:1764,
1/1/1988:1990
No text annotation
homologous
J5_8B0X_007
J5_99177.3
J5_9W0N_0051/1/2057:2064,
1/1/2446:2453,
1/1/2500:2507,
1/1/2582:2588,
1/1/2606:2611
No text annotation
J5_9W0N_0061/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2282,
1/1/2427:2435
No text annotation
homologous
J5_8B0X_009
J5_39529.2
J5_9W0N_0071/3/36:39,
1/3/403:406,
1/3/436:440,
1/3/497:500,
1/3/545:548
No text annotation
J5_9W0N_0081/3/36:39,
1/3/403:406,
1/3/436:442,
1/3/492:500,
1/3/545:548
No text annotation
homologous
J5_8B0X_002
NA
J5_9W0N_0091/3/58:61,
1/3/106:113,
1/3/314:316,
1/3/337:339,
1/3/350:354
No text annotation
homologous
J5_8B0X_003
J5_58574.3
J6_9W0N_0011/1/45:46,
1/1/179:183,
1/1/214:224,
1/1/231:235,
1/1/262:266,
1/1/426:433
No text annotation
J6_9W0N_0021/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2284,
1/1/2384:2395,
1/1/2421:2435
No text annotation
J7_9W0N_0011/1/8:15,
1/1/525:531,
1/1/2018:2023,
1/1/2040:2043,
1/1/2625:2630,
1/1/2788:2789,
1/1/2894:2895
No text annotation
J7_9W0N_0021/1/817:822,
1/1/835:838,
1/1/940:946,
1/1/971:976,
1/1/987:991,
1/1/1163:1164,
1/1/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_9W0N_008No text annotation
J4_9W0N_013No text annotation
J4_9W0N_014No text annotation

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