HL_9W0N_064

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9W0N_064 not in the Motif Atlas

Homologous match to HL_8B0X_092

Geometric discrepancy: 0.1226

The information below is about HL_8B0X_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9W0N|1|1|U|2701
9W0N|1|1|G|2702
9W0N|1|1|C|2703
9W0N|1|1|C|2704
9W0N|1|1|A|2705
9W0N|1|1|A|2706

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

Large ribosomal subunit protein bL17