HL_9W0N_080

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9W0N|1|3|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9W0N_080 not in the Motif Atlas

Homologous match to HL_8B0X_008

Geometric discrepancy: 0.172

The information below is about HL_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9W0N|1|3|C|342
9W0N|1|3|U|343
9W0N|1|3|A|344
9W0N|1|3|C|345
9W0N|1|3|G|346
9W0N|1|3|G|347

Current chains

Chain 3

16S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL14

Chain p

Large ribosomal subunit protein bL19