HL_9W0N_098

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9W0N_098 not in the Motif Atlas

Homologous match to HL_8B0X_025

Geometric discrepancy: 0.1264

The information below is about HL_8B0X_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9W0N|1|3|C|1265
9W0N|1|3|G|1266
9W0N|1|3|C|1267
9W0N|1|3|G|1268
9W0N|1|3|A|1269
9W0N|1|3|G|1270

Current chains

Chain 3

16S rRNA

Nearby chains

Chain R

Small ribosomal subunit protein uS13

Chain X

Small ribosomal subunit protein uS19