HL_9W0N_103

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

9W0N|1|5|C|17, 9W0N|1|5|G|18, 9W0N|1|5|G|19, 9W0N|1|5|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9W0N_103 not in the Motif Atlas

Homologous match to HL_7MRL_001

Geometric discrepancy: 0.3314

The information below is about HL_7MRL_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9W0N|1|5|C|13
9W0N|1|5|A|14
9W0N|1|5|G|15
9W0N|1|5|U|16
9W0N|1|5|C|17
9W0N|1|5|G|18
9W0N|1|5|G|19
9W0N|1|5|U|20
9W0N|1|5|A|21
9W0N|1|5|G|22

Current chains

Chain 5

tRNA(Phe)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain e

Large ribosomal subunit protein uL5