HL_9W0N_104
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- 9W0N|1|5|U|33, 9W0N|1|5|U|39
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9W0N_104 not in the Motif Atlas
- Homologous match to HL_1H4S_002
- Geometric discrepancy: 0.4191
- The information below is about HL_1H4S_002
- Detailed Annotation
- tRNA anticodon loop with synthetase
- Broad Annotation
- tRNA anticodon loop with synthetase
- Motif group
- HL_89167.4
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 20
Unit IDs
9W0N|1|5|G|30
9W0N|1|5|A|31
9W0N|1|5|U|32
9W0N|1|5|U|33
9W0N|1|5|G|34
9W0N|1|5|A|35
9W0N|1|5|A|36
9W0N|1|5|A|37
9W0N|1|5|A|38
9W0N|1|5|U|39
9W0N|1|5|C|40
Current chains
- Chain 5
- tRNA(Phe)
Nearby chains
- Chain 0
- Elongation factor G
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain 6
- Transfer RNA; tRNA
- Chain N
- Small ribosomal subunit protein uS9
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