HL_9W0N_105
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 9W0N|1|5|C|56, 9W0N|1|5|G|57
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9W0N_105 not in the Motif Atlas
- Homologous match to HL_1J2B_002
- Geometric discrepancy: 0.3649
- The information below is about HL_1J2B_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9W0N|1|5|G|53
9W0N|1|5|U|54
9W0N|1|5|U|55
9W0N|1|5|C|56
9W0N|1|5|G|57
9W0N|1|5|A|58
9W0N|1|5|U|59
9W0N|1|5|U|60
9W0N|1|5|C|61
Current chains
- Chain 5
- tRNA(Phe)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain e
- Large ribosomal subunit protein uL5
- Chain m
- Large ribosomal subunit protein uL16
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