HL_9WNQ_006

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9WNQ|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_006 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.3159

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9WNQ|1|A|G|259
9WNQ|1|A|G|260
9WNQ|1|A|U|261
9WNQ|1|A|A|262
9WNQ|1|A|A|263
9WNQ|1|A|C|264
9WNQ|1|A|G|265
9WNQ|1|A|G|266
9WNQ|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20