HL_9WNQ_018

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

9WNQ|1|A|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_018 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.3716

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

9WNQ|1|A|C|840
9WNQ|1|A|C|841
9WNQ|1|A|U|842
9WNQ|1|A|U|843
9WNQ|1|A|G|844
9WNQ|1|A|A|845
9WNQ|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S18