HL_9WNQ_028

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9WNQ|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_028 not in the Motif Atlas

Homologous match to HL_6CZR_098

Geometric discrepancy: 0.3805

The information below is about HL_6CZR_098

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9WNQ|1|A|U|1165
9WNQ|1|A|G|1166
9WNQ|1|A|A|1167
9WNQ|1|A|U|1168
9WNQ|1|A|A|1169
9WNQ|1|A|A|1170
9WNQ|1|A|A|1171

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2