HL_9WNQ_034
3D structure
- PDB id
- 9WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CAGUUGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9WNQ|1|X|U|16, 9WNQ|1|X|U|17, 9WNQ|1|X|G|18, 9WNQ|1|X|G|19, 9WNQ|1|X|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WNQ_034 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.183
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9WNQ|1|X|C|13
9WNQ|1|X|A|14
9WNQ|1|X|G|15
9WNQ|1|X|U|16
9WNQ|1|X|U|17
9WNQ|1|X|G|18
9WNQ|1|X|G|19
9WNQ|1|X|U|20
9WNQ|1|X|A|21
9WNQ|1|X|G|22
Current chains
- Chain X
- E-site tRNA
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: