HL_9WNQ_039
3D structure
- PDB id
- 9WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WNQ_039 not in the Motif Atlas
- Homologous match to HL_5WT1_003
- Geometric discrepancy: 0.0906
- The information below is about HL_5WT1_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9WNQ|1|Y|G|54
9WNQ|1|Y|U|55
9WNQ|1|Y|U|56
9WNQ|1|Y|C|57
9WNQ|1|Y|G|58
9WNQ|1|Y|A|59
9WNQ|1|Y|A|60
9WNQ|1|Y|U|61
9WNQ|1|Y|C|62
Current chains
- Chain Y
- A-tRNA(PRO),P-tRNA(PRO)
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- 50S ribosomal protein L16
Coloring options: