HL_9WNQ_054

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

9WNQ|1|b|U|321, 9WNQ|1|b|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_054 not in the Motif Atlas

Geometric match to HL_9E6Q_011

Geometric discrepancy: 0.0726

The information below is about HL_9E6Q_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9WNQ|1|b|G|319
9WNQ|1|b|A|320
9WNQ|1|b|U|321
9WNQ|1|b|A|322
9WNQ|1|b|C|323

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4