HL_9WNQ_058

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_058 not in the Motif Atlas

Homologous match to HL_7A0S_015

Geometric discrepancy: 0.106

The information below is about HL_7A0S_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9WNQ|1|b|C|462
9WNQ|1|b|G|463
9WNQ|1|b|U|464
9WNQ|1|b|G|465
9WNQ|1|b|A|466
9WNQ|1|b|G|467

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain e

50S ribosomal protein L4

Chain z

eRAP-NC