HL_9WNQ_060

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9WNQ|1|b|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_060 not in the Motif Atlas

Homologous match to HL_7A0S_017

Geometric discrepancy: 0.5572

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9WNQ|1|b|C|544
9WNQ|1|b|U|545
9WNQ|1|b|U|546
9WNQ|1|b|A|547
9WNQ|1|b|G|548
9WNQ|1|b|G|549

Current chains

Chain b

23S ribosomal RNA

Nearby chains