HL_9WNQ_089

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

9WNQ|1|b|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_089 not in the Motif Atlas

Homologous match to HL_7A0S_046

Geometric discrepancy: 0.5994

The information below is about HL_7A0S_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9WNQ|1|b|C|1806
9WNQ|1|b|G|1807
9WNQ|1|b|A|1808
9WNQ|1|b|A|1809
9WNQ|1|b|A|1810
9WNQ|1|b|G|1811

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain c

Large ribosomal subunit protein uL2