HL_9WNR_044

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

9WNR|1|b|G|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_044 not in the Motif Atlas

Homologous match to HL_7A0S_001

Geometric discrepancy: 0.568

The information below is about HL_7A0S_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_17803.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9WNR|1|b|U|59
9WNR|1|b|G|60
9WNR|1|b|C|61
9WNR|1|b|U|62
9WNR|1|b|A|63
9WNR|1|b|A|64
9WNR|1|b|U|65
9WNR|1|b|C|66
9WNR|1|b|U|67
9WNR|1|b|G|68

Current chains

Chain b

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL29

Chain u

Large ribosomal subunit protein uL23