HL_9WNR_048

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_048 not in the Motif Atlas

Geometric match to HL_8B0X_037

Geometric discrepancy: 0.1014

The information below is about HL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9WNR|1|b|U|158
9WNR|1|b|G|159
9WNR|1|b|A|160
9WNR|1|b|A|161
9WNR|1|b|U|162
9WNR|1|b|C|163
9WNR|1|b|C|164
9WNR|1|b|A|165
9WNR|1|b|U|166
9WNR|1|b|A|167
9WNR|1|b|G|168

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28