HL_9WNR_075
3D structure
- PDB id
- 9WNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WNR_075 not in the Motif Atlas
- Homologous match to HL_7A0S_032
- Geometric discrepancy: 0.1901
- The information below is about HL_7A0S_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9WNR|1|b|G|1281
9WNR|1|b|U|1282
9WNR|1|b|G|1283
9WNR|1|b|A|1284
9WNR|1|b|A|1285
9WNR|1|b|A|1286
9WNR|1|b|A|1287
9WNR|1|b|G|1288
9WNR|1|b|C|1289
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain o
- Large ribosomal subunit protein bL17
- Chain t
- 50S ribosomal protein L22
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