HL_9WNR_078

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9WNR|1|b|U|1396, 9WNR|1|b|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_078 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3574

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9WNR|1|b|G|1389
9WNR|1|b|U|1390
9WNR|1|b|U|1391
9WNR|1|b|A|1392
9WNR|1|b|A|1393
9WNR|1|b|U|1394
9WNR|1|b|A|1395
9WNR|1|b|U|1396
9WNR|1|b|U|1397
9WNR|1|b|C|1398

Current chains

Chain b

23S rRNA

Nearby chains

Chain V

Trigger factor

Chain u

Large ribosomal subunit protein uL23