HL_9WNR_079

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9WNR|1|b|G|1452, 9WNR|1|b|A|1453, 9WNR|1|b|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_079 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.2134

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9WNR|1|b|C|1451
9WNR|1|b|G|1452
9WNR|1|b|A|1453
9WNR|1|b|C|1454
9WNR|1|b|G|1455
9WNR|1|b|G|1456
9WNR|1|b|U|1457
9WNR|1|b|U|1458
9WNR|1|b|G|1459

Current chains

Chain b

23S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein bL17