HL_9WNR_081

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9WNR|1|b|A|1535, 9WNR|1|b|C|1536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_081 not in the Motif Atlas

Geometric match to HL_8S95_003

Geometric discrepancy: 0.2734

The information below is about HL_8S95_003

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

9WNR|1|b|C|1533
9WNR|1|b|U|1534
9WNR|1|b|A|1535
9WNR|1|b|C|1536
9WNR|1|b|G|1537
9WNR|1|b|G|1538

Current chains

Chain b

23S rRNA

Nearby chains

Chain V

Trigger factor