HL_9WNR_091

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9WNR|1|b|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_091 not in the Motif Atlas

Geometric match to HL_8OI5_044

Geometric discrepancy: 0.1497

The information below is about HL_8OI5_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9WNR|1|b|G|1910
9WNR|1|b|U|1911
9WNR|1|b|A|1912
9WNR|1|b|A|1913
9WNR|1|b|C|1914
9WNR|1|b|U|1915
9WNR|1|b|A|1916
9WNR|1|b|U|1917
9WNR|1|b|A|1918
9WNR|1|b|A|1919
9WNR|1|b|C|1920

Current chains

Chain b

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Y

Transfer RNA; tRNA

Chain Z

Transfer RNA; tRNA