HL_9WNR_098

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_098 not in the Motif Atlas

Geometric match to HL_9E6Q_072

Geometric discrepancy: 0.183

The information below is about HL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9WNR|1|b|G|2304
9WNR|1|b|U|2305
9WNR|1|b|C|2306
9WNR|1|b|G|2307
9WNR|1|b|G|2308
9WNR|1|b|A|2309
9WNR|1|b|C|2310
9WNR|1|b|A|2311
9WNR|1|b|U|2312

Current chains

Chain b

23S rRNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5