HL_9WNR_099

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_099 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.2393

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

9WNR|1|b|U|2324
9WNR|1|b|G|2325
9WNR|1|b|C|2326
9WNR|1|b|A|2327
9WNR|1|b|A|2328
9WNR|1|b|U|2329
9WNR|1|b|G|2330
9WNR|1|b|G|2331

Current chains

Chain b

23S rRNA

Nearby chains

Chain y

Large ribosomal subunit protein bL27