HL_9WW4_018

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

9WW4|1|AA|C|1437, 9WW4|1|AA|U|1438, 9WW4|1|AA|A|1443, 9WW4|1|AA|G|1444, 9WW4|1|AA|U|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_018 not in the Motif Atlas

Homologous match to HL_8GLP_020

Geometric discrepancy: 0.5531

The information below is about HL_8GLP_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20751.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9WW4|1|AA|C|1436
9WW4|1|AA|C|1437
9WW4|1|AA|U|1438
9WW4|1|AA|C|1439
9WW4|1|AA|U|1440
9WW4|1|AA|C|1441
9WW4|1|AA|C|1442
9WW4|1|AA|A|1443
9WW4|1|AA|G|1444
9WW4|1|AA|U|1445
9WW4|1|AA|C|1446
9WW4|1|AA|C|1447
9WW4|1|AA|G|1448

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AI

60S ribosomal protein L7

Chain AS

60S ribosomal protein L18

Chain Ad

60S ribosomal protein L29