HL_9WW4_023

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

9WW4|1|AA|C|1676, 9WW4|1|AA|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_023 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.0943

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9WW4|1|AA|C|1675
9WW4|1|AA|C|1676
9WW4|1|AA|PSU|1677
9WW4|1|AA|C|1678
9WW4|1|AA|A|1679
9WW4|1|AA|G|1680

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain Ac

Large ribosomal subunit protein uL15

Chain Ad

60S ribosomal protein L29

Chain Aq

60S ribosomal protein L36a