HL_9WW4_042

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9WW4|1|AA|C|2794, 9WW4|1|AA|G|2796, 9WW4|1|AA|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_042 not in the Motif Atlas

Homologous match to HL_8GLP_045

Geometric discrepancy: 0.0479

The information below is about HL_8GLP_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9WW4|1|AA|C|2792
9WW4|1|AA|G|2793
9WW4|1|AA|C|2794
9WW4|1|AA|A|2795
9WW4|1|AA|G|2796
9WW4|1|AA|C|2797
9WW4|1|AA|A|2798
9WW4|1|AA|G|2799

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AR

60S ribosomal protein L17

Chain Al

60S ribosomal protein L37

Chain An

60S ribosomal protein L39