HL_9WW4_054

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9WW4|1|AA|G|4195

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_054 not in the Motif Atlas

Homologous match to HL_8GLP_059

Geometric discrepancy: 0.0414

The information below is about HL_8GLP_059

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9WW4|1|AA|C|4193
9WW4|1|AA|U|4194
9WW4|1|AA|G|4195
9WW4|1|AA|OMG|4196
9WW4|1|AA|G|4197
9WW4|1|AA|G|4198
9WW4|1|AA|C|4199
9WW4|1|AA|G|4200
9WW4|1|AA|G|4201

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AL

Ribosomal protein uL16-like

Chain Ad

60S ribosomal protein L29