HL_9WW4_058

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UUCAG(OMU)ACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_058 not in the Motif Atlas

Homologous match to HL_8GLP_063

Geometric discrepancy: 0.0503

The information below is about HL_8GLP_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15296.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9WW4|1|AA|U|4301
9WW4|1|AA|U|4302
9WW4|1|AA|C|4303
9WW4|1|AA|A|4304
9WW4|1|AA|G|4305
9WW4|1|AA|OMU|4306
9WW4|1|AA|A|4307
9WW4|1|AA|C|4308
9WW4|1|AA|G|4309

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AS

60S ribosomal protein L18

Chain AV

60S ribosomal protein L21

Chain Ac

Large ribosomal subunit protein uL15

Chain Aq

60S ribosomal protein L36a