HL_9WW4_062

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9WW4|1|AA|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_062 not in the Motif Atlas

Homologous match to HL_8GLP_067

Geometric discrepancy: 0.0605

The information below is about HL_8GLP_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9WW4|1|AA|A|4474
9WW4|1|AA|G|4475
9WW4|1|AA|C|4476
9WW4|1|AA|A|4477
9WW4|1|AA|G|4478
9WW4|1|AA|A|4479
9WW4|1|AA|A|4480
9WW4|1|AA|U|4481

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AK

60S ribosomal protein L9

Chain Ao

Ubiquitin-60S ribosomal protein L40