HL_9WW4_067
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- C(PSU)GAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9WW4|1|AA|G|4694, 9WW4|1|AA|C|4698
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WW4_067 not in the Motif Atlas
- Homologous match to HL_9PN5_065
- Geometric discrepancy: 0.0824
- The information below is about HL_9PN5_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.5
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 13
Unit IDs
9WW4|1|AA|C|4688
9WW4|1|AA|PSU|4689
9WW4|1|AA|G|4690
9WW4|1|AA|A|4691
9WW4|1|AA|A|4692
9WW4|1|AA|C|4693
9WW4|1|AA|G|4694
9WW4|1|AA|C|4695
9WW4|1|AA|C|4696
9WW4|1|AA|U|4697
9WW4|1|AA|C|4698
9WW4|1|AA|U|4699
9WW4|1|AA|A|4700
9WW4|1|AA|A|4701
9WW4|1|AA|G|4702
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AK
- 60S ribosomal protein L9
- Chain AQ
- 60S ribosomal protein L13a
- Chain Ao
- Ubiquitin-60S ribosomal protein L40
Coloring options: