HL_9WW4_076

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

9WW4|1|AC|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_076 not in the Motif Atlas

Homologous match to HL_8GLP_080

Geometric discrepancy: 0.0952

The information below is about HL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9WW4|1|AC|C|107
9WW4|1|AC|A|108
9WW4|1|AC|C|109
9WW4|1|AC|U|110
9WW4|1|AC|U|111
9WW4|1|AC|G|112

Current chains

Chain AC

5.8S rRNA (156-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AZ

60S ribosomal protein L23a

Chain Al

60S ribosomal protein L37

Chain An

60S ribosomal protein L39