HL_9WW4_092

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UG(PSU)UCAAAG

Length

9 nucleotides

Bulged bases

9WW4|1|BA|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_092 not in the Motif Atlas

Homologous match to HL_9SUM_085

Geometric discrepancy: 0.0917

The information below is about HL_9SUM_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9WW4|1|BA|U|820
9WW4|1|BA|G|821
9WW4|1|BA|PSU|822
9WW4|1|BA|U|823
9WW4|1|BA|C|824
9WW4|1|BA|A|825
9WW4|1|BA|A|826
9WW4|1|BA|A|827
9WW4|1|BA|G|828

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BX

40S ribosomal protein S9

Chain Bc

40S ribosomal protein S24