HL_9WW4_108
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- AUUGCAAUUAU(PSU)
- Length
- 12 nucleotides
- Bulged bases
- 9WW4|1|BA|U|1621, 9WW4|1|BA|U|1622, 9WW4|1|BA|A|1623
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WW4_108 not in the Motif Atlas
- Homologous match to HL_9PN5_108
- Geometric discrepancy: 0.1435
- The information below is about HL_9PN5_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.4
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9WW4|1|BA|A|1614
9WW4|1|BA|U|1615
9WW4|1|BA|U|1616
9WW4|1|BA|G|1617
9WW4|1|BA|C|1618
9WW4|1|BA|A|1619
9WW4|1|BA|A|1620
9WW4|1|BA|U|1621
9WW4|1|BA|U|1622
9WW4|1|BA|A|1623
9WW4|1|BA|U|1624
9WW4|1|BA|PSU|1625
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BK
- 40S ribosomal protein S15
- Chain BM
- 40S ribosomal protein S18
- Chain BN
- Small ribosomal subunit protein eS19
- Chain BT
- 40S ribosomal protein S29
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