HL_9WW4_109

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9WW4|1|BA|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_109 not in the Motif Atlas

Homologous match to HL_9H3G_107

Geometric discrepancy: 0.2258

The information below is about HL_9H3G_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9WW4|1|BA|G|1658
9WW4|1|BA|U|1659
9WW4|1|BA|C|1660
9WW4|1|BA|A|1661
9WW4|1|BA|U|1662
9WW4|1|BA|A|1663
9WW4|1|BA|A|1664
9WW4|1|BA|G|1665
9WW4|1|BA|C|1666

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BL

40S ribosomal protein S16

Chain BN

Small ribosomal subunit protein eS19

Chain BO

40S ribosomal protein S20

Chain BT

40S ribosomal protein S29