HL_9WW5_005

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9WW5|1|AA|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_005 not in the Motif Atlas

Homologous match to HL_8GLP_005

Geometric discrepancy: 0.1245

The information below is about HL_8GLP_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9WW5|1|AA|U|204
9WW5|1|AA|C|205
9WW5|1|AA|U|206
9WW5|1|AA|G|207
9WW5|1|AA|A|208
9WW5|1|AA|U|209
9WW5|1|AA|C|210
9WW5|1|AA|G|211

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain Aa

60S ribosomal protein L26

Chain Ag

60S ribosomal protein L32