HL_9WW5_014

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UCUUG(1MA)(A2M)AC(A2M)

Length

10 nucleotides

Bulged bases

9WW5|1|AA|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_014 not in the Motif Atlas

Homologous match to HL_9SUM_015

Geometric discrepancy: 0.0622

The information below is about HL_9SUM_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9WW5|1|AA|U|1317
9WW5|1|AA|C|1318
9WW5|1|AA|U|1319
9WW5|1|AA|U|1320
9WW5|1|AA|G|1321
9WW5|1|AA|1MA|1322
9WW5|1|AA|A2M|1323
9WW5|1|AA|A|1324
9WW5|1|AA|C|1325
9WW5|1|AA|A2M|1326

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain Ac

Large ribosomal subunit protein uL15

Chain Ag

60S ribosomal protein L32