HL_9WW5_027

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_027 not in the Motif Atlas

Homologous match to HL_9H3G_032

Geometric discrepancy: 0.0858

The information below is about HL_9H3G_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9WW5|1|AA|G|1886
9WW5|1|AA|G|1887
9WW5|1|AA|A|1888
9WW5|1|AA|U|1889
9WW5|1|AA|G|1890
9WW5|1|AA|A|1891
9WW5|1|AA|A|1892
9WW5|1|AA|C|1893

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AI

60S ribosomal protein L7

Chain Ag

60S ribosomal protein L32

Chain Ah

60S ribosomal protein L35a