HL_9WW5_028

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAA

Length

70 nucleotides

Bulged bases

9WW5|1|AA|A|1960, 9WW5|1|AA|G|1975, 9WW5|1|AA|U|1980, 9WW5|1|AA|A|1983, 9WW5|1|AA|A|1984, 9WW5|1|AA|C|1987, 9WW5|1|AA|G|1988, 9WW5|1|AA|G|1989, 9WW5|1|AA|A|1990, 9WW5|1|AA|G|1995, 9WW5|1|AA|U|1997, 9WW5|1|AA|A|1998, 9WW5|1|AA|A|2002, 9WW5|1|AA|U|2004, 9WW5|1|AA|G|2007, 9WW5|1|AA|U|2008, 9WW5|1|AA|A|2009, 9WW5|1|AA|C|2011, 9WW5|1|AA|U|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW5|1|AA|U|1957
9WW5|1|AA|A|1958
9WW5|1|AA|U|1959
9WW5|1|AA|A|1960
9WW5|1|AA|G|1961
9WW5|1|AA|A|1962
9WW5|1|AA|C|1963
9WW5|1|AA|A|1964
9WW5|1|AA|G|1965
9WW5|1|AA|C|1966
9WW5|1|AA|A|1967
9WW5|1|AA|G|1968
9WW5|1|AA|G|1969
9WW5|1|AA|A|1970
9WW5|1|AA|C|1971
9WW5|1|AA|G|1972
9WW5|1|AA|G|1973
9WW5|1|AA|U|1974
9WW5|1|AA|G|1975
9WW5|1|AA|G|1976
9WW5|1|AA|C|1977
9WW5|1|AA|C|1978
9WW5|1|AA|A|1979
9WW5|1|AA|U|1980
9WW5|1|AA|G|1981
9WW5|1|AA|G|1982
9WW5|1|AA|A|1983
9WW5|1|AA|A|1984
9WW5|1|AA|G|1985
9WW5|1|AA|U|1986
9WW5|1|AA|C|1987
9WW5|1|AA|G|1988
9WW5|1|AA|G|1989
9WW5|1|AA|A|1990
9WW5|1|AA|A|1991
9WW5|1|AA|U|1992
9WW5|1|AA|C|1993
9WW5|1|AA|C|1994
9WW5|1|AA|G|1995
9WW5|1|AA|C|1996
9WW5|1|AA|U|1997
9WW5|1|AA|A|1998
9WW5|1|AA|A|1999
9WW5|1|AA|G|2000
9WW5|1|AA|G|2001
9WW5|1|AA|A|2002
9WW5|1|AA|G|2003
9WW5|1|AA|U|2004
9WW5|1|AA|G|2005
9WW5|1|AA|U|2006
9WW5|1|AA|G|2007
9WW5|1|AA|U|2008
9WW5|1|AA|A|2009
9WW5|1|AA|A|2010
9WW5|1|AA|C|2011
9WW5|1|AA|A|2012
9WW5|1|AA|A|2013
9WW5|1|AA|C|2014
9WW5|1|AA|U|2015
9WW5|1|AA|C|2016
9WW5|1|AA|A|2017
9WW5|1|AA|C|2018
9WW5|1|AA|C|2019
9WW5|1|AA|U|2020
9WW5|1|AA|G|2021
9WW5|1|AA|C|2022
9WW5|1|AA|C|2023
9WW5|1|AA|G|2024
9WW5|1|AA|A|2025
9WW5|1|AA|A|2026

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AU

60S ribosomal protein L18a

Chain Ao

Ubiquitin-60S ribosomal protein L40