HL_9WW5_032

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

9WW5|1|AA|G|2421, 9WW5|1|AA|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_032 not in the Motif Atlas

Homologous match to HL_8GLP_034

Geometric discrepancy: 0.0533

The information below is about HL_8GLP_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9WW5|1|AA|A|2420
9WW5|1|AA|G|2421
9WW5|1|AA|OMC|2422
9WW5|1|AA|A|2423
9WW5|1|AA|OMG|2424
9WW5|1|AA|U|2425
9WW5|1|AA|U|2426

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AR

60S ribosomal protein L17

Chain AT

60S ribosomal protein L19

Chain An

60S ribosomal protein L39